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View Structure Prediction Details

Protein: CE35506
Organism: Caenorhabditis elegans
Length: 626 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35506.

Description E-value Query
Range
Subject
Range
acd-1 - status:Partially_confirmed UniProt:P91102 protein_id:AAB42338.2
498.0 [0..9] [626..20]

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Predicted Domain #1
Region A:
Residues: [1-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSPPISPYH VDFRAGSSKE SLSPSTPSPM YPKCNFRYND SRTQMIIEVP MAQLKKFQKA  60
   61 EGTISVKRET QHFCETTTMH GPKRIFKGKR IFTKLFWLIM VLGSLGLLIY QCWILSASYL 120
  121 SKPIVSQVSF LIPEDGMEFP SVTVCNFTPI RKSYIEAMNR TGDVSPDMIN YLMNWFTEIP 180
  181 ILLGNTDQQS LNKGNEELRE YQSIHPNFTV DQFFMDASFD CSDLMKLCSF QGESFDCCSL 240
  241 ASPTLTPVGK CFTLDLSKSP MNKQTEPGIR AGLSLTLDAN LDEQFDSSTG IDALLPNSFV 300
  301 NGFRYFVHPK DTIPNLASDE YTVSPNSVAY SAISKFRYVL LPPNDWGNCT EDYPYGIQSN 360
  361 LSYTSGNCLS LCKAKYFMNQ CGCTPALYNI GNNFQECTPF ETYNCVNNSL SLLNEETGKM 420
  421 EFQPPSCTRC GQQCDSQVYR ADNSNGNQFS AGAFNYFNSK NSSWSVDYMK SNFQMIRIFY 480
  481 RDMSYTEYNQ VQDASITDLL SAIGGNMGMF LGGSVITIVE LFLFFSKVFW IGFSKTRRNY 540
  541 LYSKRANEKA H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 105.0
Match: 2qtsA
Description: No description for 2qtsA was found.

Predicted Domain #2
Region A:
Residues: [552-626]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKEVVETVEK MKVIASQGNL TSLSDATCAT PPLKLSSPNK KVEFRINFED LASQLDFDSS  60
   61 ECKGKSEKSS NLQKY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle