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View Structure Prediction Details

Protein: CE35503
Organism: Caenorhabditis elegans
Length: 225 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35503.

Description E-value Query
Range
Subject
Range
gi|50759261 - gi|50759261|ref|XP_417591.1| PREDICTED: similar to actinfilin [Gallus gallus]
177.0 [0..7] [222..41]

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Predicted Domain #1
Region A:
Residues: [1-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTDEKIRL NIGGTIFETS KSTLTKFDGF FKTLLETDIP IQKDDSNCIF IDRSPRHFEK  60
   61 ILNYLRDGAD VDLLPESEKE VREILKEAQF YLLEGLMELC KRSSCKIRTF ESYHHLLKLI 120
  121 AEAGKPVLVM FYLVKDNRIV HVPNNFEFLD FLEKHQGKLD IYFKESPYET THQNPSQFLP 180
  181 PGREEAAPSW TYCFYNTPKL PFRFTISFVE KLEEDIEFVL GNLNK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.69897
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle