YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: tre-4
Organism: Caenorhabditis elegans
Length: 635 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tre-4.

Description E-value Query
Range
Subject
Range
gi|157772146 - gi|157772146|ref|XP_001677893.1| Hypothetical protein CBG07446 [Caenorhabditis briggsae AF16]
gi|39596525, gi|... - gi|39596525|emb|CAE63144.1| Hypothetical protein CBG07446 [Caenorhabditis briggsae], gi|187033386|em...
488.0 [0..1] [631..1]

Back

Predicted Domain #1
Region A:
Residues: [1-635]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWTPQLLIS VLIGYVQARL EISELRFKDI LSSHYIFKPL EVPCNESLCT GPLSEIYCHG  60
   61 PILTNSWQFG LQKTCPGDKL KVTAKEVLAN FNKLPWPLKK EVFQQFCEEH FEQVNYLEVV 120
  121 NLTDYEVQPK FLNEIGNLSH RKLAAEMHER WERLARQFTS DVQHHPDLYP LIPVQNPFIV 180
  181 PGGRFDVYFY WDTFWIIKGL LVSRMFETTK GIINNFSNLV VTLGYIPNSG NLQLSRRSQP 240
  241 PLFPHMIWEY TKATGNYEKQ WIDSMDMEMK FWENNRTIAI GTHKLFLYKT LTNCPRPENF 300
  301 LGDFNIGKAA KTPSDVWRSI SSACESGWDF SSRWMHNNDT DLSSIHTDLI IPVDLNVFIA 360
  361 NNYRYMAYYA NHFGRFDKSA SYRQKYEKLR YAIQEVLWDN NLGAWFDYDI SIQKRNLNFY 420
  421 PSNVYPLMLE GMDKFADRVE DYMKKSGALE FVGGIPSSLP AQSTQQWDFP NVWAPNQHFV 480
  481 IQSFMACNNS FLQQEAKKQA MEFIETVYNG MYNPIAGLDG GVWEKYDARS TNGAPGAGGE 540
  541 YVVQEGFGWT NGAVMDLIWT LRDSHKKQIR SENLKLDQGQ HFALVLTAFI FCIAIAFIVI 600
  601 IKGIIKGNTL NQRDDEEAGA RLLAEENDED DQEEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.39794
Match: 2jf4A
Description: No description for 2jf4A was found.

Predicted functions:

Term Confidence Notes
trehalase activity 8.21995956919006 bayes_pls_golite062009
alpha,alpha-trehalase activity 8.15034892377685 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 2.91663376644963 bayes_pls_golite062009
hydrolase activity 1.70627242352696 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 1.61226907827219 bayes_pls_golite062009
catalytic activity 1.16285856935495 bayes_pls_golite062009
binding 0.614457867010069 bayes_pls_golite062009
protein binding 0.31260719357226 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle