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View Structure Prediction Details

Protein: CE35417
Organism: Caenorhabditis elegans
Length: 230 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35417.

Description E-value Query
Range
Subject
Range
gi|39598008, gi|... - gi|39598008|emb|CAE68700.1| Hypothetical protein CBG14619 [Caenorhabditis briggsae], gi|187028013|em...
gi|157769715 - gi|157769715|ref|XP_001676678.1| Hypothetical protein CBG14619 [Caenorhabditis briggsae AF16]
256.0 [0..67] [218..9]

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Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRSLTPQG RPPKFPAKRN RSVGVRDFIV GMQKCIIIVH DCAERVTATC LSASDCLSDI  60
   61 QMEGSSPIAP HRGFNRKARV TLLDKTEIDR VMPKSSSEFD IRKKLNSMAS RKKDSSDSSP 120
  121 KSQCSVSSIP EHPTFDSIGE RPNVKKHMKL GDLGKTRSCV ELKTNDKRLL RTFQEDNIIK 180
  181 MPSMDSDIGD DHVTGVNDLC LSFEGLGKSL IYSQSDDNNS NDVKSKKAKN 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle