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View Structure Prediction Details

Protein: CE35349
Organism: Caenorhabditis elegans
Length: 409 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35349.

Description E-value Query
Range
Subject
Range
gi|5817414 - gi|5817414|gb|AAD52750.1|AF123692_1 NADH dehydrogenase [Tetranema mexicanum]
290.0 [0..2] [400..42]

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Predicted Domain #1
Region A:
Residues: [1-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEFLFISLL WLFKPIYFLL FTVMFSFLIF NNFSWGGLFL VLDSYSFILL IVMSLFILGI  60
   61 IVISEKNNNL LILSEILVFI CIIFFIPSNM MMLYMFFELS MFPILVMILG YGSQIEKINS 120
  121 SYYLMFYAAF CSFPFLFVYF KSNFLLVFTY YNFVISWEMF FILSLSFMMK FPIYFLHLWL 180
  181 PKAHVEAPTT ASML

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [195-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAGLLLKLGT AGFLRILGSL SFVHNNVWIL IAFLGMILGS FCCVFQSDSK ALAAYSSVTH  60
   61 MSFLLLSLVF ITMSSKISSV MLMLAHGYTS TLMFYLIGEF YHTSGSRMIY FMSSFFSSSM 120
  121 IMGILFSVVF LSNSGVPPSL SFLSEFLVIS NSMLISKSMF VMIFIYFVVS FYYSLFLITS 180
  181 SLMGKGYHNF NTWNVGFSAP LVLMMYNVFW LSVFY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle