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View Structure Prediction Details

Protein: CE35240
Organism: Caenorhabditis elegans
Length: 340 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35240.

Description E-value Query
Range
Subject
Range
gi|187030421, gi... - gi|39590357|emb|CAE66096.1| Hypothetical protein CBG11315 [Caenorhabditis briggsae], gi|187030421|em...
gi|157759970 - gi|157759970|ref|XP_001672327.1| Hypothetical protein CBG11315 [Caenorhabditis briggsae AF16]
276.0 [0..1] [339..1]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQCGNIRTL ICNSEEDYNI YDDEFDSLGS LKKPRNKKLF ISTIALAFLI LAAILITIFL  60
   61 LTRNNSPRAT YDRKNDSKLL DLI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVSPAAQRLP KKGKLFCWVQ TSTIYHDTRS LAINETWIHR CDHGQLFTSE RFNDTRIPYS  60
   61 TVFKGIPDDY YNLFFKSRYA FHHIYTNISS EFDWYLKADD DTFVIVENLR SFLSTLNPDE 120
  121 PHYLGYVLKP YLKNGYNAGG AGYILSRAAL KIFSEQLYSN ATLCPDDIYE DVGIARCLAN 180
  181 AGMYPEDTRN SLGQNRFNTF SPSDTFHQTK AGIDWVKFKE NKGYEAFAND LISFHKLSPD 240
  241 EIRLFDILLY RTNRKNE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.522879
Match: 2j0aA
Description: No description for 2j0aA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle