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View Structure Prediction Details

Protein: CE35006
Organism: Caenorhabditis elegans
Length: 535 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35006.

Description E-value Query
Range
Subject
Range
gi|7428009, gi|3... - pir||T01989 calcium-dependent protein kinase (EC 2.7.1.-) 1 - common tobacco, gi|3283996|gb|AAC25423...
325.0 [0..13] [478..84]

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Predicted Domain #1
Region A:
Residues: [1-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSGEKLPSL KLDMNVPVRN KWHPVKVLGS GAFGKVVHVV NIVDGSDGAM KMEKYQEGNE  60
   61 SVLKGEVEVL RALSGQKNAI QLLDSGLEPD YRFIVMTLCG MDLQKVYNLL KGQFSDSTVL 120
  121 RVAIRSLHAV KALHEACYIH RDLKPCNVTL DYNEYSPLIF LIDFGMGRKY AKIDEGEYVI 180
  181 RRPRDACRFR GTIRYCSPRM HLRREQGRVD DLYAWLYMIV ELKVELPWSE VVHPDRIEFL 240
  241 KLEKFDAAMA SNPLTKSFEP IMDHLKTLRY PDRPNYLMIY ELLAKMMSDL NAKHTDPMDY 300
  301 DVFRKKNEVT DAIKKKYQTR SRLPEKALEE SATIAVLEEA FRPKTSDVPG GDQYVVK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.69897
Match: 2bdwA
Description: Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [358-535]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLLKLSWGSV VAASDFPTAD EVETVEEKDL KKKQDAKNQE SDKRKNSDRK KKSERKKKGS  60
   61 KGDMILEKSK ETKDHRESGR RLTDREANAV GGKSIDAKSK GNKDMEQRTI MIDKPGSITP 120
  121 KSKRSRTTTK IPHKTPHKSH LRKEKQESSA NSKRLNVAPL VHPTVLVVPA SKKKPKGT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle