YRC Public Data Repository - Protein Structure Prediction

Protein:	CE35000
Organism:	Caenorhabditis elegans
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35000.

Description	E-value	Query Range	Subject Range
KLHDB_DROYA - Kelch-like protein diablo OS=Drosophila yakuba GN=dbo PE=3 SV=1 KLHDB_DROSE - Kelch-like protein diablo OS=Drosophila sechellia GN=dbo PE=3 SV=1 dbo-PA - The gene diablo is referred to in FlyBase by the symbol Dmel\dbo (CG6224, FBgn0040230). It is a prot...	146.0	[0..1]	[169..71]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIELCVGG QKFTTTKTTL LKNVCLFQKM AEIKNHNSTM CMFIDRSPAH FDSILNFMRD  60
   61 GEIDFPDAIL ECRRLRREAV YYELEELVKN CDVEIAKREA NINAKNSEDT NSPAASQRLD 120
  121 TLSASDQPVI TEVPETPRLP GNGSLSLLEI RDAPSNESIG NQMRTPEIGN TVTTEKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.0
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits