YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ers-3
Organism: Caenorhabditis elegans
Length: 481 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ers-3.

Description E-value Query
Range
Subject
Range
SYE_BACLD - Glutamate--tRNA ligase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200...
433.0 [0..7] [479..1]

Back

Predicted Domain #1
Region A:
Residues: [1-481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLTGFLKQN VRVRFAPSPT GHLHIGGLRT AFFNYLFAKK YGGDFILRIE DTDRTRFVDD  60
   61 AQDQIYSSLN FYNLLPDEGP REGGKFGPYE QSKRLEIYRN AAYRLIDSGH AYRCFCSENR 120
  121 LDLLRKTAEK RGEIPKYDRK CANLSSRDAV KMEQNGEKFV IRFKLDKQNV QFHDEVFGSV 180
  181 NQFIDESDPV LLKSDGFPTY HLANVIDDRK MEISHVIRGM EWLSSTGKHT ILYKAFNWTP 240
  241 PKFVHLSLIM RSATKKLSKR DKDAFVSYYS EQLGALPEAV LNLMIRNGAG IRNFDAEHFY 300
  301 SLDEMIEQFD LSLLGRRNLL LDSDVLQKYS RMAFQKSDFK ELYPRIIDIL NKKSNYSTSR 360
  361 EDIQKIVTFL KAKEENFGFL SSLSTEFSWF FTRPQSSQLL KESHPNVDLR NILNSLLEIE 420
  421 VFNSESLEYL AKNHQLNLAK AMGIVRISLI GSKKGPPISE LVEFFGMTEC HRRIRIMQEL 480
  481 L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 110.0
Match: 2o5rA
Description: No description for 2o5rA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle