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View Structure Prediction Details

Protein: CE34919
Organism: Caenorhabditis elegans
Length: 122 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34919.

Description E-value Query
Range
Subject
Range
gi|71018117, gi|... - gi|71018117|ref|XP_759289.1| hypothetical protein UM03142.1 [Ustilago maydis 521], ref|XP_400757.1| ...
117.0 [0..10] [112..66]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFSNEKKRL ESGCGAVLQG MAGKKVFVEL RNDVYVIGIL ESCDSNLDIR IQYATIIRDA  60
   61 QKTEEPEYLV IGKHVRFVHF EHQVVPIAAI RRCMKGDQTG RPKQNRRLDQ KQFDTGRKIV 120
  121 DQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.39794
Match: 1b34A
Description: D1 core SNRNP protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle