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View Structure Prediction Details

Protein: col-111
Organism: Caenorhabditis elegans
Length: 332 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-111.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
311.0 [0..30] [331..1462]

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Predicted Domain #1
Region A:
Residues: [1-332]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVDNAAIAT WTSVLVSVAC ISFCAFFAAS VCEDINQFLD DSLLSFKEGQ GRTDDAWNEV  60
   61 VFLNDKKFKS ELLVSNSATV RQKRSDLPAH CNCLSQNQCP PGPPGPPGPA GMDGKPGEPG 120
  121 ASGPHGMSGS ELTKMMRNDD TCIKCPAGPP GPRGAPGSVG EPGPQGRDGM GGRPGNMGRP 180
  181 GPPGPAGDPG QAGSKGAPGT HGRQGMPGVR YQLGEPGPAG YPGPRGAPGP VGPPGVAEEG 240
  241 PDGLPGPAGP PGKPGMPGPM GTPGGPGEPG IPGSDAAYCP CPKREALVES SVISQEVPET 300
  301 GYGDGGDKSK REKVVETHQE EQTYDSFKFE QV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.69897
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle