YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE34766
Organism: Caenorhabditis elegans
Length: 223 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34766.

Description E-value Query
Range
Subject
Range
gi|157758101 - gi|157758101|ref|XP_001671394.1| Hypothetical protein CBG17705 [Caenorhabditis briggsae AF16]
gi|39595040, gi|... - gi|39595040|emb|CAE70908.1| Hypothetical protein CBG17705 [Caenorhabditis briggsae], gi|187025582|em...
413.0 [0..1] [222..1]

Back

Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDFDIEKF LKTVAEKNPE LIEGVEGNSE DFKTDEFEKN LVDLHPELAE EICDFDERTV  60
   61 REEKEKTISK KQQARDRQIR LEAMMTDGRS VIEKKGITFH DKMITIEGPM SMIANAVINQ 120
  121 KRIEVRVRSA IRIDRIFEGI PTTFDEHFNL MMKDVTETVL HGRKAQKEFT NRKEMQLLLP 180
  181 EFLRWKEGGN WPMKVGTNRL IEHRFQRACF IKGDSVVLVR MLP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.92
Match: 1b34B
Description: D2 core SNRNP protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle