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View Structure Prediction Details

Protein: CE34703
Organism: Caenorhabditis elegans
Length: 364 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34703.

Description E-value Query
Range
Subject
Range
gi|33086592, gi|... - gi|77735350|ref|NP_001029301.1| SEC62 homolog [Rattus norvegicus], gi|33086592|gb|AAP92608.1| Ab2-29...
407.0 [0..1] [349..208]

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Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRNQKGVS TEDAVKMTKE QEDIAKYIRF NCPTATTMFE GNEVHYFSGN KAVDTLWESK  60
   61 YGNKAKKDAM FKTRDDCFHY ICELNS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [87-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQLFFRAKKL VAKKKENKDK GNDSSAEVTK SPKGVVEKRN KKAKEEETAT EAEGDEKEVK  60
   61 KDEKKDEEKK KKKVKLLVHE VQAFVDDKDV YVWVFDPTPL MKKIIGVLML VGTIVGCLFP 120
  121 LWPVWLRQGV YYVSITGIGC FAAIIVTAIL RTILFGIIYA VTFGKHKLWV LPNLTEDCGV 180
  181 LESFQPWYTY EYVG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [281-364]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEKKEAKKDK KDKKSKKEKD SDAEEEEQDH IAAEQEQKEE EDDDAEKNSQ ASTDDNYEKI  60
   61 EDEEISAPPS PSDDAPRKRR PAKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle