| Protein: | cup-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 668 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cup-5.
| Description | E-value | Query Range |
Subject Range |
|
|
415.0 | [0..18] | [607..264] |
|
Region A: Residues: [1-204] |
1 11 21 31 41 51
| | | | | |
1 MSRRSTTDRS DFNDNASNAS SNASRRPTIN FQEIMEDLPH HERETGERLR RHLQFFFMNP 60
61 MEKWKVRHQL PYKLVLQVLK IVFVTMQLIL FAEMRMSHVD FLEDTTTVMR HRFLKEWNDD 120
121 RDALQYPPAE GRYSVYDDQG LSEHLSFLIN SYYSIRNDSF ASFSYDVVSH PSGNLGAQIS 180
181 FESIPPIEVL IDRISNVTVN NNTY
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [205-668] |
1 11 21 31 41 51
| | | | | |
1 NFDIREVKDT KRLNLTETEV FQIGQSDDAV RDILATRGIT FLPEDALKIS TVQFKFRLRT 60
61 IHYSPTAGDQ KPECYKISVS IKFDNSRHTG QVHVTLSTVV SYVNVCNGRI IKGQVSGVGW 120
121 SFDTLLIGGT DIFVLILCIL SLILCCRALI KAHLLQIKTS DYFENVLKNK ITVTDQLDFL 180
181 NLWYVMIVVN DALIIIGTVA KISIEFQDFD NSLFTLTSIF LGMGALLVYV GVLRYFGFFS 240
241 QYNILMLTLK RSAPNIMRFM TCAIVLYAGF LIAGWVIIGP YSMKFRTLAE SSEALFSLLN 300
301 GDDMFATFYT INDSNTVIKV FGTVYIYLFV SLFIYVVLSL FIAIIMDAYE VVKDRYSDGL 360
361 RAIEKRGCLR DFVESNPPPS ELGSPTTRSA YAPSNLLNLA AGNDSSRALR ALHAIDNARD 420
421 WLSSLRDGTR FQSFSNPLND SNEDVLADQN ANGNDPHNSR PSNV
|
| Detection Method: | |
| Confidence: | 45.39794 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
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