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View Structure Prediction Details

Protein: rab-18
Organism: Caenorhabditis elegans
Length: 193 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rab-18.

Description E-value Query
Range
Subject
Range
gi|50738954 - gi|50738954|ref|XP_419342.1| PREDICTED: similar to ras-related protein [Gallus gallus]
189.0 [0..1] [191..216]

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Predicted Domain #1
Region A:
Residues: [1-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRFVDDVFD PEQAATIGVD FRVTSMAIDG NRVKLAIWDT AGQERFRTLT PSYYRGAQGV  60
   61 ICVYDVTSRS SFEKLNHWMQ EVDTYCTNDN IIKMMVANKI DMVRKSRFCS IFGLKNNFQP 120
  121 NRVVTREEGL KFAKRHRTLF IEASAKTKEG VQCTFEELIE KIIQTPDLWD NDRPSFRLGQ 180
  181 PTGSSGGGGM CGC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.30103
Match: 1x3sA
Description: Crystal structure of human Rab18 in complex with Gppnhp
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle