YRC Public Data Repository - Protein Structure Prediction

Protein:	dss-1
Organism:	Caenorhabditis elegans
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dss-1.

Description	E-value	Query Range	Subject Range
gi\|42550616, gi\|... - gi\|46116298\|ref\|XP_384167.1\| hypothetical protein FG03991.1 [Gibberella zeae PH-1], gi\|42550616\|gb\|E...	95.0	[0..1]	[71..1]
gi\|169608137, gi... - gi\|169608137\|ref\|XP_001797488.1\| hypothetical protein SNOG_07135 [Phaeosphaeria nodorum SN15], gi\|11...	81.0	[0..2]	[78..10]
gi\|151942336 - gi\|151942336\|gb\|EDN60692.1\| suppressor of exocyst mutations [Saccharomyces cerevisiae YJM789] SEM1 - Component of the lid subcomplex of the regulatory subunit of the 26S proteasome; involved in mRNA ex... gi\|190404701 - gi\|190404701\|gb\|EDV07968.1\| 26 proteasome complex subunit SEM1 [Saccharomyces cerevisiae RM11-1a] SEM1_YEAST - 26S proteasome complex subunit SEM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEM1...	69.0	[0..1]	[76..5]
gi\|114197171, gi... - gi\|115491367\|ref\|XP_001210311.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114197171\|gb\|EA...	66.0	[0..4]	[71..2]
gi\|67521572, gi\|... - gi\|67521572\|ref\|XP_658849.1\| hypothetical protein AN1245.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	64.0	[0..3]	[71..4]
DSS1_CAEBR - Probable 26S proteasome complex subunit dss-1 OS=Caenorhabditis briggsae GN=dss-1 PE=3 SV=1 gi\|157776992 - gi\|157776992\|ref\|XP_001666562.1\| hypothetical protein CBG15145 [Caenorhabditis briggsae AF16]	61.0	[0..35]	[82..29]
SEM1_NEUCR - Putative 26S proteasome complex subunit sem-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /... SEM1_NEUCR - Putative 26S proteasome complex subunit sem-1 OS=Neurospora crassa GN=sem-1 PE=3 SV=1	59.0	[0..1]	[76..1]
gi\|88179995, gi\|... - gi\|88179995\|gb\|EAQ87463.1\| predicted protein [Chaetomium globosum CBS 148.51], gi\|116194968\|ref\|XP_0...	58.0	[0..6]	[76..14]
gi\|50284913, gi\|... - gi\|50284913\|ref\|XP_444884.1\| hypothetical protein CAGL0A02728g [Candida glabrata CBS138], gi\|4952418... gi\|49524186 - gi\|49524186\|emb\|CAG57777.1\| unnamed protein product [Candida glabrata]	57.0	[0..25]	[76..12]
gi\|145010687, gi... - gi\|39940352\|ref\|XP_359713.1\| hypothetical protein MGG_05064 [Magnaporthe grisea 70-15], gb\|EAA52372....	56.0	[0..7]	[76..14]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTAAKKDV KSSAVPVTAV VEKKEFEEEE FEEFPVQEWA ERAEGEEDDV NVWEDNWDDE  60
   61 THESEFSKQL KEELRKSGHQ VA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.89
Match:	1iyjA
Description:	STRUCTURE OF A BRCA2-DSS1 COMPLEX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits