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View Structure Prediction Details

Protein: CE34394
Organism: Caenorhabditis elegans
Length: 254 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34394.

Description E-value Query
Range
Subject
Range
gi|109123828 - gi|109123828|ref|XP_001113229.1| PREDICTED: uncharacterized hematopoietic stem/progenitor cells prot...
277.0 [0..2] [253..1]

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Predicted Domain #1
Region A:
Residues: [1-123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYISENELK FLRLLERTKR LTKEDMSANV WKVSAATKIL NKMIYTLQND ETTNDILHEY  60
   61 RQEVLQLKLL AEAESKSSAE ERLKVIEKIP RVFPDVQVTV ADSKNDNEAE SYDFEKESAA 120
  121 GLR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [124-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATQRSIYRSD LRKQLLSSNK HRAQDTSEDQ EFMKNELVEE ELANSLATMA RSFKTMMSAA  60
   61 GDVIKEDTER AILMAKEVDD NKTALGIQSE RVERHAYKCG YDCFKVMLIV LIFMSFVSMV 120
  121 LMMKIFKKAS T

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.522879
Match: 1l4aD
Description: Synaptosomal-assosiated protein SNAP-25
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle