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View Structure Prediction Details

Protein: CE34340
Organism: Caenorhabditis elegans
Length: 132 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34340.

Description E-value Query
Range
Subject
Range
CG17218-PA - This gene is referred to in FlyBase by the symbol Dmel\CG17218 (CG17218, FBgn0032421). It is a prote...
136.0 [0..3] [131..10]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFIVFAPL FAVSAPLNCY ICNSKKQPDC IDNYQAFNTI CPVRSLGGVK LHEPVGCRVT  60
   61 RQYSKEKMWI IRECGYLGEE RERKFNTTTY LNGEPATCVF SQCSENLCNS AESSNYFLTA 120
  121 AAVFVAIFKL FA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.16
Match: 1ywhA
Description: crystal structure of urokinase plasminogen activator receptor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle