YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE34338
Organism: Caenorhabditis elegans
Length: 271 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34338.

Description E-value Query
Range
Subject
Range
CE07369 - status:Partially_confirmed UniProt:Q21407 protein_id:AAB53873.1
292.0 [0..1] [270..1]

Back

Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHRKLAAFF SCFASRRFSF SLYSLYILFC AGAFPIPRSP SSFFLTISFS SSILPFSSIQ  60
   61 KNYWLVTEKK NQKKKAFGGS EQNEANPPKL LVYMDQDYKA HFKVFCSEVR EWEKIHVVGS 120
  121 LPVLGEWNPR KSFPLTKSTD EENTFHAIVS VPSSIKEFNF RYIRVMYLDP SENNTSEPIM 180
  181 VLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.69897
Match: 1cgxA
Description: SITE DIRECTED MUTATIONS OF THE ACTIVE SITE RESIDUE TYROSINE 195 OF CYCLODEXTRIN GLYXOSYLTRANSFERASE FROM BACILLUS CIRCULANS STRAIN 251 AFFECTING ACTIVITY AND PRODUCT SPECIFICITY
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [184-271]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KWETFNNART CLIGVESQDG VARKNITDQF GSYSGKTQIT DGWILNEKES VVYFRIHGEA  60
   61 LKFFAKSYAN KEYRLKVEPF DVRYSEVS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle