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View Structure Prediction Details

Protein: fbxa-145
Organism: Caenorhabditis elegans
Length: 362 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fbxa-145.

Description E-value Query
Range
Subject
Range
gi|157746497 - gi|157746497|ref|XP_001668344.1| Hypothetical protein CBG12334 [Caenorhabditis briggsae AF16]
gi|39589707, gi|... - gi|39589707|emb|CAE66942.1| Hypothetical protein CBG12334 [Caenorhabditis briggsae], gi|187029470|em...
206.0 [0..1] [353..1]

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Predicted Domain #1
Region A:
Residues: [1-67]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNCSGTAKV ELLESFENWN KLPPEIKLEC MKHLDFKTRF IMRSVSRTER ILVDSHNFKL  60
   61 DSVRIEG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [68-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLPYPMNTII QSSFDTQKIT IKSGNHEQCV VHMRNRLRFN ETIVPLLVFI LKNATINDFS  60
   61 IETILNIDWS KVLQDALNSK SLSIRSFSGV LLKFQEAFFF VNKLNYTSKS IYLDGHGCKN 120
  121 FPIDQLISIE SVSNASLLQI RDVQSKDIIW KIANKWIETD AAIGTRFQLT SMSKEIITQF 180
  181 SSHFKNRIIS ASDVEILIRT D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [269-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPMKHILLKL ARTWRVARPF TCIVISAETE QSEFVNFGMW VSKKVIPLWE YISLFLADEF  60
   61 NDDDGLNLSS FLILLLHCIW LIFSMLFKRT FYGQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle