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View Structure Prediction Details

Protein: CE34238
Organism: Caenorhabditis elegans
Length: 720 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34238.

Description E-value Query
Range
Subject
Range
CE36908 - status:Partially_confirmed UniProt:O61746 protein_id:AAC16990.3
738.0 [0..1] [720..26]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDADLKIF MDFLVEKTKD AFQPMIAVQV FREYLNEKSH LHDYHYKRFC CDLAPNMNEW  60
   61 NNYSIEARIR LMYALGGKVE SDFLERIETH GTVELNKKRK ITKYTSN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 56.346787
Match: PF04435.9
Description: No description for PF04435.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [108-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGILSLQDNR VHFTRFMDFL IQKTKYAVEP MNFNQVLEEF CRLEPDCRHY GVYYVRFHHK  60
   61 LAPNMDALNN YNIYDRIRLM FVLNGKVSGD FFKTIKTHGT VELDRKKKIT KYVSNDGKLK 120
  121 LGG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 66.657577
Match: PF04435.9
Description: No description for PF04435.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [231-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIISDTRLMD FLIQKTRHSV EPMQATNLIF KEFSERPSRI LDKMYQLRFY QKLAPNMNEW  60
   61 NRYSIEQRIR LMFVLKGKVA DDFLKTIPIL SMAKRIMICR IETHGTVELD EKRRIRKYTS 120
  121 NDGKLSLKKP 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 59.283997
Match: PF04435.9
Description: No description for PF04435.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [361-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTDDTSCPTN IRFMDFLIQN TKDGAESIRL IYNEFALLEG NVLSASTYSS RFCKKLAPKM  60
   61 SQWSNYRIED RIRMMFALKG KVESDFLAQM IQSGAVQLDE NYRIVRYTSN NGKVELSEKR 120
  121 SGVKRRSSTK SSKTLGKRRQ VIEKEL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 57.283997
Match: PF04435.9
Description: No description for PF04435.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [507-720]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDLDEPEFVG IMHGYPKQEP VYEEIINQDM RYNNEDPHIP PEIEQFPIQA VHLEEPKFDP  60
   61 ISSMNIGRGT LAQRFGTTSS ESDGISVHNF LISLELILTS LESDTLIDLM REIKELRNRT 120
  121 NDEILPPDLV IPALQTCFMG ITRKFRPEVS APSKSAGECL RILKYSLLWL QSPLLYDLQK 180
  181 RVQEEIENCG ADGKVIPIAD IQQGIRNILF AVSI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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