YRC Public Data Repository - Protein Structure Prediction

Protein:	ptps-1
Organism:	Caenorhabditis elegans
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ptps-1.

Description	E-value	Query Range	Subject Range
gi\|109108666 - gi\|109108666\|ref\|XP_001108264.1\| PREDICTED: 6-pyruvoyltetrahydropterin synthase [Macaca mulatta]	178.0	[0..3]	[139..8]
gi\|114640356 - gi\|114640356\|ref\|XP_001147929.1\| PREDICTED: 6-pyruvoyltetrahydropterin synthase [Pan troglodytes]	177.0	[0..8]	[139..13]
PTPS_PONAB - 6-pyruvoyl tetrahydrobiopterin synthase OS=Pongo abelii GN=PTS PE=2 SV=1 PTPS_PONPY - 6-pyruvoyl tetrahydrobiopterin synthase - Pongo pygmaeus (Orangutan)	176.0	[0..9]	[139..14]
gi\|117645424, gi... - gi\|123994915\|gb\|ABM85059.1\| 6-pyruvoyltetrahydropterin synthase [synthetic construct], gi\|123980116\|... PTS - 6-pyruvoyltetrahydropterin synthase	176.0	[0..9]	[139..14]
pr-PC - The gene purple is referred to in FlyBase by the symbol Dmel\pr (CG16784, FBgn0003141). It is a prot... gi\|220942732 - gi\|220942732\|gb\|ACL83909.1\| pr-PB [synthetic construct] gi\|194134321, gi... - gi\|195345266\|ref\|XP_002039191.1\| GM16965 [Drosophila sechellia], gi\|194134321\|gb\|EDW55837.1\| GM16965...	175.0	[0..1]	[139..1]
gi\|78213852, gi\|... - gi\|78213852\|ref\|YP_382631.1\| 6-pyruvoyltetrahydropterin synthase [Synechococcus sp. CC9605], gi\|7819...	173.0	[0..3]	[138..150]
gi\|165377310, gi... - gi\|76635142\|ref\|XP_583363.2\| PREDICTED: similar to 6-pyruvoyl tetrahydrobiopterin synthase precursor...	172.0	[0..5]	[139..10]
gi\|50760194 - gi\|50760194\|ref\|XP_417928.1\| PREDICTED: similar to 6-pyruvoyl tetrahydrobiopterin synthase precursor...	172.0	[0..5]	[139..54]
PTPS_POERE - 6-pyruvoyl tetrahydrobiopterin synthase OS=Poecilia reticulata GN=pts PE=2 SV=1	172.0	[0..5]	[139..12]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRMPIVTME RVDSFSAAHR LHSEKLSDAE NKETFGKCNN SNGHGHNYVW KVKLRGEVDP  60
   61 TSGMVYDLAK LKKEMSLVLD TVDHRNLDKD VEFFKTTVST SENVAIYMFE KLKSVMSNPS 120
  121 VLYKVTIEET PKNIFTYKGC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	2g64A
Description:	No description for 2g64A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits