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View Structure Prediction Details

Protein: CE34235
Organism: Caenorhabditis elegans
Length: 409 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34235.

Description E-value Query
Range
Subject
Range
gi|39589810, gi|... - gi|39589810|emb|CAE67045.1| Hypothetical protein CBG12452 [Caenorhabditis briggsae], gi|187029574|em...
gi|157746703 - gi|157746703|ref|XP_001668447.1| Hypothetical protein CBG12452 [Caenorhabditis briggsae AF16]
519.0 [0..1] [407..1]

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Predicted Domain #1
Region A:
Residues: [1-73]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNEETEVKP WIVRIILIVG GLFGAHRLYL KQVPEAFVFF STLGVLLIGW LYDSFMFKYE  60
   61 VNEYNQLINQ SEN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [74-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKEKEKWKNG KMQASQSKFV DFSFTRFLYS VLYGSYIGLA TWLACTVTFG WTDINLIPFI  60
   61 CVVALGITAG IYIIGQCGGQ SRELSYIWMA SFSSMFIMVR LAQTTVFRAI FLTAIVSTVI 120
  121 GNRSARLKKR RHTWKHFLFW SSLFLMLVCV ILLGCSRKVA DKQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [237-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTATRPGTFR ETISVGSLIR DRIFDAKKVH SFFEGNPIIE YHSKSDIKNK NGEKTLKNSS  60
   61 FWYQVWSGEL FDELTGAAHL TKIDWIELTT TFIVDVLRSE ARVIDGSSTI EPFKWALWRN 120
  121 YLIHRFSLDP LISDDRLRTE CKKWQTEEKS KKGNVDRDYN ILAAKQGCST FLL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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