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View Structure Prediction Details

Protein: grd-15
Organism: Caenorhabditis elegans
Length: 209 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for grd-15.

Description E-value Query
Range
Subject
Range
gi|7510552 - gi|7510552|pir||T27466 hypothetical protein Y87G2A.n - Caenorhabditis elegans
270.0 [0..1] [209..1]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEVTVICLL VFLYSTCQIA FSVPIVVSEL NGEKFSAAPN NTPITKVYIF GRPVYIREPF  60
   61 VIPQRDEQID FPKLIEDASR QRKHRAPYVD EPVLAAKPKY AEHKYP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.957
Match: 1kqfC
Description: Formate dehydrogenase N, cytochrome (gamma) subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [107-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKQCYTETSG FMCCNPKLEK VMSETALKMK SSKSCNLQKM SSMLQAASEK AFGTDFEAIA  60
   61 GTGDFASKIH FYSDFVCKME REGRTMLVYA TPSRHNYAMP YQL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.14
Match: 1re6A
Description: Localisation of Dynein Light Chains 1 and 2 and their Pro-apoptotic Ligands
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle