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View Structure Prediction Details

Protein: CE34165
Organism: Caenorhabditis elegans
Length: 368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34165.

Description E-value Query
Range
Subject
Range
gi|109042996, gi... - gi|109042996|ref|XP_001106444.1| PREDICTED: similar to UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosami...
CCDS3244.1_1 - null
273.0 [0..1] [365..1]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFSNLFQIF LWARVAVIAS FFITFLLLWN YRNVQNSSQY HANSKGKFVF EENCTRSGWN  60
   61 LNTTAERTMD YGTSFIISFA DIQKTYKWLY LPETDI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLRSPDILMM VASRTDSFAR RNVLRKTWMN KNYSEIVRDG RMKALFLVGM VSEDYRVRRI  60
   61 VMEEAKLYGD MVVIDLEDTY DDLPFKSLSL LLYAVSKAPE FKVIGKIDED VMFFPDKLIP 120
  121 LLDGKVIDPD AAAFYGQLLK EGEPVIKKKD AHWYVPDYAY NCTGYPAYVA GPFYLATRKA 180
  181 AKLVLKFTKF QNFMTVEDSL ITGILANDLG IPRKNLEHVY RHDYDIQDNE GKEILAWHSF 240
  241 KNNIPYRNFF VKRVARHRYE QNLSNMLLEI NR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.39794
Match: 2j0aA
Description: No description for 2j0aA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle