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View Structure Prediction Details

Protein: wrt-7
Organism: Caenorhabditis elegans
Length: 481 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for wrt-7.

Description E-value Query
Range
Subject
Range
gi|157750570 - gi|157750570|ref|XP_001678997.1| Hypothetical protein CBG12986 [Caenorhabditis briggsae AF16]
gi|187029008, gi... - gi|39595979|emb|CAE67482.1| Hypothetical protein CBG12986 [Caenorhabditis briggsae], gi|187029008|em...
388.0 [0..8] [479..6]

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Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNISKCVLVV ALLSLCCKLS FGSSCGETTI PFSFEILPTG QPVLGCARPT CFGWDPKGYH  60
   61 LPTDARFVRI DRKRDGFLR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [80-481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDPIYTYPFT PDGSKMYLQQ NSTCEPAFQS AMCDSKIQWV GGVEPVQDVN STHDIAYQCC  60
   61 TYPPLRESTD RGMTLVAAGQ IVIGGEVFKN GSQYAFDYIS NIAKNIDEYG KIFYEVNVRR 120
  121 LACLDPHNAD RSVDEIWDSE NTIRKVNGKK AMAHQVPNVA VGNAVPQYNV YPAVAQQPAP 180
  181 YSYLPAAPQC QQYYCFPNDA VVNVYEKAVK RMDELEIGDW VEALDENGED ITFLPVKYWL 240
  241 HRDPEQEAEF LEFSLDNGET FTLTEKHLVY TTECRQNSSE LKISWESISA GKVNAGDCFY 300
  301 LAQSEALTKY RLVEILDIKR VKKTGIYAPM TSQGHLLVNK IHTSCHSEVD HHILQNSFFK 360
  361 HVLKWKNKIT KYFWSYETER NIGQSLNSLI AIFNLVVPSN MY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.39794
Match: 1vdzA
Description: Crystal structure of A-type ATPase catalytic subunit A from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle