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View Structure Prediction Details

Protein: pha-1
Organism: Caenorhabditis elegans
Length: 453 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pha-1.

Description E-value Query
Range
Subject
Range
pha-1 - DNA-binding protein pha-1 status:Confirmed UniProt:Q27242 protein_id:CAA21655.1
604.0 [0..1] [453..1]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTPNSSCTI LFENLYDNDL ALKLFNNRTI VDNILRNVKG DINNRLELRL VNKSFNLAAI  60
   61 HVIRKENRTV VFHKFNRCDR LHKISPCPDC SVHLNSVKLN KKNIFQYARF LKQTMKIMVI 120
  121 KIRIEDSKRV CCMITDVHQV IHKSLIGSDY DKVEEFVGID QISFSTCIPC EKIAANCKVF 180
  181 GPVQNDMFNA ILRLK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [196-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HHYDVLQVKD MRLYKLMILN KEDPTVVEDF INSNITCSKL TIFLMYMYEK EAFGYSLPRE  60
   61 FLDLLIKKWN VKTVEIVPRQ 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [276-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQPIPYYFHC NTDFIVPKAK FYVDYWTQPR SKYTLDGVEI DLQLTKVVEQ QIKNRKSLFD  60
   61 NFIANARRIF PSNKITVRFS KEVCQEMMSQ GNVEDFISGI ILMTQKDAQP NSHISLKLYP 120
  121 EEVDAPLIDS FLRENFEKKF DSWNLETVSD SSANLPAEKC YQFFNQSTNC KIIFYICC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle