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View Structure Prediction Details

Protein: CE34120
Organism: Caenorhabditis elegans
Length: 422 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34120.

Description E-value Query
Range
Subject
Range
gi|157766768 - gi|157766768|ref|XP_001675727.1| Hypothetical protein CBG05696 [Caenorhabditis briggsae AF16]
gi|39585422, gi|... - gi|39585422|emb|CAE61744.1| Hypothetical protein CBG05696 [Caenorhabditis briggsae], gi|187034927|em...
291.0 [0..16] [279..1]

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Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSRNYENQQ QQQGGHVPPV ASNTVTIGTS ANSQVRIGPS TQIRSLSNVA LRHHQPVPIR  60
   61 KIVHHDTGGG PQFQPPKDEP IDNSMLDYQA STSSGPLIAT SSQNSNSFQQ YQRGGPGGSS 120
  121 AMSSGALVMN SSNNGAANNN MMAMDQPA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [149-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVNLAAKVAE VFLTAGHAFQ KLGDLTLQLH TTTDADESKW SEKEVDNLKN ALTRFAHELD  60
   61 QISTCVANRT TKHIKNDIKR RHMMTSSEDP SSISGGPSAG GSHHPKRMAM SSSGGGAGAS 120
  121 GPSSSAP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [276-422]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPSSSYSTGA GGGALLSTGH AVPIMGAGGT GGHKRIMQPI GKMVATRAVI PTRYTVAPSS  60
   61 STSTVILNSH SSPGGGGMPH LQSQNLSASS APPPLPRGVV PTTTVTRVVA PHTLLHQGPP 120
  121 IKDLPPASSL IPTSWRKKSP ETEFVKN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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