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View Structure Prediction Details

Protein: grd-3
Organism: Caenorhabditis elegans
Length: 181 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for grd-3.

Description E-value Query
Range
Subject
Range
gi|39583837 - gi|39583837|emb|CAE74910.1| Hypothetical protein CBG22788 [Caenorhabditis briggsae]
gi|157771474 - gi|157771474|ref|XP_001677557.1| Hypothetical protein CBG22788 [Caenorhabditis briggsae AF16]
226.0 [0..1] [176..177]

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Predicted Domain #1
Region A:
Residues: [1-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLLLLGAV IAVRAQSDTC PSLKDRQLAK PGQLFCCDST IKTVVETGMQ TLDLFGAGGP  60
   61 QTLGPIVQAL STFVQQHFKT AYEIVMAPKD FVLNTHYNGT SLCKFQSNSY TLAIYETPAK 120
  121 YDINSSREKY FNKFALNDKL RLPSVSKHLK QFSGLANTAT GGLSGSAGSV AGGLAGGFFG 180
  181 R

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.99
Match: 1re6A
Description: Localisation of Dynein Light Chains 1 and 2 and their Pro-apoptotic Ligands
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.505766470116817 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle