YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ags-3
Organism: Caenorhabditis elegans
Length: 75 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ags-3.

Description E-value Query
Range
Subject
Range
gi|25534507 - pir||AH2108 hypothetical protein all2423 [imported] - Nostoc sp. (strain PCC 7120)
gi|17229915, gi|... - gi|17229915|ref|NP_486463.1| hypothetical protein all2423 [Nostoc sp. PCC 7120], gi|17131515|dbj|BAB...
97.0 [0..9] [75..529]

Back

Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDRSCYKLT QEGERLFRMQ KYEKGIDLLK KALEVGTDDF SLLSAIYCQL GNAHTMLKDY  60
   61 EQALKFHTYD ILVER

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 1na3A
Description: Designed protein cTPR2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle