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View Structure Prediction Details

Protein: CE33994
Organism: Caenorhabditis elegans
Length: 560 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE33994.

Description E-value Query
Range
Subject
Range
gi|55240292, gi|... - gi|58385970|ref|XP_314345.2| scavenger receptor class B (AGAP004846-PC) [Anopheles gambiae str. PEST...
AGAP004846-PB, A... - SCRB9: Class B Scavenger Receptor (CD36 domain).|protein_coding|2L:4419676:4427118:1|gene:AGAP004846...
521.0 [0..1] [560..17]

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Predicted Domain #1
Region A:
Residues: [1-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFVAIILA AVILLVFALG IFLLIPFPIA IFQSIVDSQV YLQQKSDGQL PTGTFYWSKI  60
   61 PAVQIWTFHL FNVTNPDEVL YYGATPNMLE IGPYTYTETE FKDFTQFRDN DNEIFYVNNK 120
  121 TWVYDPTRSC EDCKLSDSVQ FANTAYMSTV FMQIYQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [157-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAGPIVGFGL DVLTILLGEQ PLRTVTAGGT LFDGYNDPLI TLINSPLVKV LLSVLGNPVQ  60
   61 LPQVPAAGFF PHYSHTCDGN YTIRTGKDNT DYVGQIKTWN GLTH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [261-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPWWKTEDTS DLRGTCDGTI QKPGIQKTDT VVQFQSFLCR KYNLHYHESK TVNSIPTYGF  60
   61 KVEDDSYDAI KNPGYRYENF EKVNYFPNWP CGLNHTKQNN GNCALVDCNQ YDNFCNACCD 120
  121 GSHVNGTYVM PPGMVPQRCL PGQMVPT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [408-560]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFGAILSAPH FYGAPKVVTE SMVGIHPDPE LHRPGTFYIN PATGSTIGGE FRMMLSIPVF  60
   61 QSLAWTLMSN APNAIMPSFT LTIGVVMKDY AVNYIYFNTV TIPNIVLGLG IGFTAVSLIA 120
  121 VLLWGFCYFR SKRNAKPFVL QQHRTEPTWS VAE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle