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View Structure Prediction Details

Protein: cpg-1
Organism: Caenorhabditis elegans
Length: 160 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cpg-1.

Description E-value Query
Range
Subject
Range
gi|110624800, gi... - gi|110624800|ref|NP_001036067.1| chitinase 10 [Tribolium castaneum], gi|109895312|gb|ABG47448.1| chi...
116.0 [0..6] [151..1117]

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Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLKPVLLAF LVASAYAQYG VAGMYENLPL ETTTLDGSGD GSGADNGFVS GADAVAIDTD  60
   61 CSTKEDGLYA IGGCSPQFLT CSGGISRIMD CPADLIYDPR IVACEYSYNV PQCGGVPQDV 120
  121 TSTQEAIFIC ENGLFFSPEQ ARCAPADQIA ECHQTTVQYY 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.69897
Match: 1wawA
Description: Specificity and affnity of natural product cyclopentapeptide inhibitor Argadin against human chitinase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle