| Protein: | lgc-37 |
| Organism: | Caenorhabditis elegans |
| Length: | 483 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lgc-37.
| Description | E-value | Query Range |
Subject Range |
|
|
352.0 | [0..2] | [474..117] |
|
Region A: Residues: [1-377] |
1 11 21 31 41 51
| | | | | |
1 MVTVFIIPII ALIHGHHSQA VIDMKRQRLS SRSTTYNQTL IRYTTKVLDT ILLNQDKNFR 60
61 PVNPDNSPLQ VEVDISIRSM GPVSEQNMEF SLDCYFRQKW LDRRLAFTPI NPSKPEIPLA 120
121 SKMLKDIWIP DTYIRNGRKS YLHTLTVPNI LFRVRSDGQV HVSQRLTIRS RCQMFLKKFP 180
181 MDTQACPIEV GSLGYFSKDV VYKWKDVELD AKMGNTLSQY QVLSLSKSER NVSDFRFSDR 240
241 NISVLNVYFK LQRQQGYYIL QIYTPCTLVV VMSWVSFWIN KEASPARVSL GIMTVLSMST 300
301 IGFGLRTDLP KVSHSTALDV YILTCFVFLF AAMVEYAVIN YAQIVYIRKQ IHDLKGLEQN 360
361 TAMGQMFTAG LMGARRR
|
| Detection Method: |  |
| Confidence: | 71.39794 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [378-483] |
1 11 21 31 41 51
| | | | | |
1 DTIQVDDLTV EKEEARLKAV PWWKKLCFKD EQGNTSMFYR MAVKAAIAKK TLRNGDPAEV 60
61 VNKIDNFSKL AFPTLYIIFN VFYWVAYLHL IPDEIDSLPN IAGGLY
|
| Detection Method: | |
| Confidence: | 30.09691 |
| Match: | 1oedA |
| Description: | Acetylcholine receptor protein, alpha chain |
Matching Structure (courtesy of the PDB): |
|
