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View Structure Prediction Details

Protein: CE33791
Organism: Caenorhabditis elegans
Length: 508 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE33791.

Description E-value Query
Range
Subject
Range
gi|73962131 - gi|73962131|ref|XP_860952.1| PREDICTED: similar to CpG binding protein (Protein containing PHD finge...
484.0 [0..11] [442..129]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKEIEDNE DVWKERCMNC IRCNDEKNCG TCWPCRNGKT CDMRKCFSAK RLYNEKVKRQ  60
   61 TDENLKAIMA KTAQREAAHQ AATTTAP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.154902
Match: 2j2sA
Description: No description for 2j2sA was found.

Predicted Domain #2
Region A:
Residues: [88-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAPVVIEQQV EKKKRGRKKG SGNGGAAAAA QQRKANIINE RDYVPNRPTR QQSADLRRKR  60
   61 TQLNAEPDKH PRQCLNPNCI YESRIDSKYC SDECGKELAR MRLTEILPNR CKQYFFEGPS 120
  121 GGPRSLEDEI KPKRAKINRE VQKLTESEKN MMAFLNKLVE FIKTQLKLQP LGTEERYDDN 180
  181 LYEGCIVCGL PDIPLLKYTK HIELCWARSE KAISFGAPEK N

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [309-508]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDMFYCEKYD SRTNSFCKRL KSLCPEHRKL GDEQHLKVCG YPKKWEDGMI ETAKTVSELI  60
   61 EMEDPFGEEG CRTKKDACHK HHKWIPSLRG TIELEQACLF QKMYELCHEM HKLNAHAEWT 120
  121 TNALSIMMHK QPNIIDSEQM SLFNKSQSTS SSASAHGATT PISSTSSSSS SSSKNDDEME 180
  181 DTAEFLANLA VQKEEETQNN 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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