| Protein: | dop-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 460 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dop-1.
| Description | E-value | Query Range |
Subject Range |
|
|
238.0 | [0..2] | [312..21] |
|
Region A: Residues: [1-275] |
1 11 21 31 41 51
| | | | | |
1 MNDLQWPLLG LFSVLIILAL FGNLLVCAAI LWDRSLRKQP ENLFLVSLAV SDLLVSVLVM 60
61 LFAAVNDILG YWPFGQFYCQ FWISFDITTC TASILNLCAI SLDRYWHISR PMVYIRYCNR 120
121 RRINYVIVLV WLISAGIGAA PLGFGFGSKV TINNLTGLPV CEMRLPLPYA IGSSMVSFFL 180
181 PAMVMVILYT KLYLYARKHV RSIKTQLQQA TSFLIMQLAS EKIREVTAAT LKGEALLPPD 240
241 SPATERTTMT VSRHYSRRST TTTTTATPRR GDKKT
|
| Detection Method: |  |
| Confidence: | 22.69897 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [276-460] |
1 11 21 31 41 51
| | | | | |
1 SSQNKVESIR TSIFSKLNFL CPTRFKNQRS PQDPHTPAAH NRSNISDQKA RLTLGVIMGT 60
61 FLVCWLPFFT VNILRAWLPE IFSSKTIMAV TWLGYANSSA NPLIYSIFNR DFRRAFKKII 120
121 VRVFGCCWEE PDLNKSISSR YAAPDNIERR RSCTRSSESA HDNNNDANAT RLNLLSNNNE 180
181 ETIPE
|
| Detection Method: | |
| Confidence: | 4.91 |
| Match: | 1f88A |
| Description: | Rhodopsin |
| Matching Structure (courtesy of the PDB): |
|
