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View Structure Prediction Details

Protein: nac-3
Organism: Caenorhabditis elegans
Length: 478 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nac-3.

Description E-value Query
Range
Subject
Range
gi|45501274, gi|... - gi|47086231|ref|NP_998067.1| solute carrier family 13 member 3 [Danio rerio], gi|45501274|gb|AAH6737...
299.0 [0..2] [475..53]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVMPLAVT AMLPVVLFPL VGVLDANTTA KEYMNDTNFL FIGGLIMAAA VEKCDLHERV  60
   61 ALSVLRCVGS EPKWIMLGFM TVTALLSSFI SNTATTAMMV PIGQSVVQQL ISSFQHHPT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGERGRLGCK KMATGLVLSI CFAANIGGTG TATGTPSNLV MLGQLSALFP KVDGSLNYVT  60
   61 WIFFAYPLML LCLFVAWMTL VSFFLRDAPE KDEAVTEMLK TRYNELPRMT YAEKSVFVCF 120
  121 CILLSLWVFR NPGVVPGFGV FFKKG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [265-478]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AYTDATSAMI VAFLLFVLPS ERPDLATYIK KEDLKKRGCL MDWKTMQETF PWSVVLLLGG  60
   61 GFALAAGVKE SGLSLLIGNS LSSIEHLPLW ILQLLTMLIA MVITNICSNT VTASIFVPIV 120
  121 ATLAQRAGHH PFTLMLPTTL ASSFAFIFPV GTPPNAIVFG SGMVKVSDMA FVGGIISLEL 180
  181 LVLTVLYMNS IAYLTLPLLE FPTWAIIANS TMQQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle