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View Structure Prediction Details

Protein: nac-3
Organism: Caenorhabditis elegans
Length: 566 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nac-3.

Description E-value Query
Range
Subject
Range
gi|39590593, gi|... - gi|39590593|emb|CAE64963.1| Hypothetical protein CBG09797 [Caenorhabditis briggsae], gi|187031288|em...
gi|157774057 - gi|157774057|ref|XP_001665094.1| hypothetical protein CBG09797 [Caenorhabditis briggsae AF16]
335.0 [0..1] [564..1]

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Predicted Domain #1
Region A:
Residues: [1-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSLHLSGW PENSESRQRM LESSSSTNFV QHFVSREISN KERLLSLFRR LRNGLVLVLT  60
   61 PLFFGQMLNW EGPEWKCAYC VCIIAVYWMS EVMPLAVTAM LPVVLFPLVG VLDANTTAKE 120
  121 YMNDTNFLFI GGLIMAAAVE KCDLHERVAL SVLRCVGSEP KWIMLGFMTV TALLSSFISN 180
  181 TATTAMMVPI GQSVVQQLIS SFQHH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [206-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTNGERGRLG CKKMATGLVL SICFAANIGG TGTATGTPSN LVMLGQLSAL FPKVDGSLNY  60
   61 VTWIFFAYPL MLLCLFVAWM TLVSFFLRDA PEKDEAVTEM LKTRYNELPR MTYAEKSVFV 120
  121 CFCILLSLWV FRNPGVVPG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [345-566]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGVFFKKGAY TDATSAMIVA FLLFVLPSER PDLATYIKKE DLKKRGCLMD WKTMQETFPW  60
   61 SVVLLLGGGF ALAAGVKESG LSLLIGNSLS SIEHLPLWIL QLLTMLIAMV ITNICSNTVT 120
  121 ASIFVPIVAT LAQRAGHHPF TLMLPTTLAS SFAFIFPVGT PPNAIVFGSG MVKVSDMAFV 180
  181 GGIISLELLV LTVLYMNSIA YLTLPLLEFP TWAIIANSTM QQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle