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View Structure Prediction Details

Protein: CE33408
Organism: Caenorhabditis elegans
Length: 452 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE33408.

Description E-value Query
Range
Subject
Range
gi|51094456 - gi|51094456|gb|EAL23715.1| ubiquitin specific protease 42 [Homo sapiens]
229.0 [0..2] [446..82]

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Predicted Domain #1
Region A:
Residues: [1-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNVKWNERA VIVSPSVSMS PESDTLAQSE SSVGIFNSSS SCWLSCIVQL LIRVPQLESV  60
   61 LLNFTSMEYL NYALQYNKKN LKHAELLYTI VGTFRELKSA RSTSRPIEVI ALLQVLEKMS 120
  121 ASPIIDHQQD VCELFTTISQ WLEIAIDDAM DYHVNHENNH SEEERQLYIN QKKMFDRIFP 180
  181 SFRHNDSLGV TVNAQVGNFR ASVEHFFEHF TSNSVDMVFV QFDRAMEDRT KSNERMEFPK 240
  241 SFQPKFPKVS NQKVSNQSFQ KFRTKKFPTQ PNANSSCYYK LTGLIVHVGS SAKEGHFYSF 300
  301 VLQNESSRWS KFDDDRVSNV RWEDVAAQSF GTGSSKTASA CLLVYAKMDG DY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.30103
Match: 2ibiA
Description: No description for 2ibiA was found.

Predicted Domain #2
Region A:
Residues: [353-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDMSDDMMVI RRNPQSTPAV SIMEEPVIDD FALDPNFGIG CPPKCDVVGN ENDTISTHSL  60
   61 PRFQRFRRRR FLGGFFKKRK LIRKTEAKTI VPWSDAKVQK 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle