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View Structure Prediction Details

Protein: CE33407
Organism: Caenorhabditis elegans
Length: 499 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE33407.

Description E-value Query
Range
Subject
Range
gi|51094456 - gi|51094456|gb|EAL23715.1| ubiquitin specific protease 42 [Homo sapiens]
225.0 [0..20] [493..57]

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Predicted Domain #1
Region A:
Residues: [1-499]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSRDDVIIG QGDIEEKNSM RSIHEYGSLE IENLFNHQPT RRQFLLDMLN VKWNERAVIV  60
   61 SPSVSMSPES DTLAQSESSV GIFNSSSSCW LSCIVQLLIR VPQLESVLLN FTSMEYLNYA 120
  121 LQYNKKNLKH AELLYTIVGT FRELKSARST SRPIEVIALL QVLEKMSASP IIDHQQDVCE 180
  181 LFTTISQWLE IAIDDAMDYH VNHENNHSEE ERQLYINQKK MFDRIFPSFR HNDSLGVTVN 240
  241 AQVGNFRASV EHFFEHFTSN SVDMVFVQFD RAMEDRTKSN ERMEFPKSFQ PKFPKVSNQK 300
  301 VSNQSFQKFR TKKFPTQPNA NSSCYYKLTG LIVHVGSSAK EGHFYSFVLQ NESSRWSKFD 360
  361 DDRVSNVRWE DVAAQSFGTG SSKTASACLL VYAKMDGDYD DMSDDMMVIR RNPQSTPAVS 420
  421 IMEEPVIDDF ALDPNFGIGC PPKCDVVGNE NDTISTHSLP RFQRFRRRRF LGGFFKKRKL 480
  481 IRKTEAKTIV PWSDAKVQK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.0
Match: 2f1zA
Description: Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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