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View Structure Prediction Details

Protein: CE33383
Organism: Caenorhabditis elegans
Length: 352 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE33383.

Description E-value Query
Range
Subject
Range
gi|42528206, gi|... - gi|42528206|ref|NP_973304.1| hypothetical protein TDE2706 [Treponema denticola ATCC 35405], gi|41819...
137.0 [0..3] [349..4]

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Predicted Domain #1
Region A:
Residues: [1-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSLLSIGL SQFGLSVLQT LFMFYYVKVY INQFHVNTKW FNIAQTLFMV WNAINDPLFG  60
   61 YLQEIRGSWL TNRLLVIKTL SPFLVGSFVF MWIPWNTEGS DLEGLHLVLS LFLYDAFFSA 120
  121 ISVAWGALFA DTTQNQSLIR VKALKYSQIA ILLSVFSIAV TEKLSNSLKN FPIFQGICFF 180
  181 VAILSFICLW WGGHFGKITN NRQEDKEQGD REVLIEKEQE KEKEHQLTFH ENVQNSIHLT 240
  241 KQILSQRQFL AIVITNFFHT ARSIAHMNFA SIITEILIPQ DILPSGSIRL SLFFMLLTLG 300
  301 PQIILIVNEK LIANAGAIRV ISVSYIVSFL SGFMIVASGN PYSIMLFMLI DW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.045757
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle