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View Structure Prediction Details

Protein: rme-1
Organism: Caenorhabditis elegans
Length: 555 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rme-1.

Description E-value Query
Range
Subject
Range
gi|109105844 - gi|109105844|ref|XP_001118235.1| PREDICTED: EH-domain containing 1 [Macaca mulatta]
400.0 [0..1] [541..171]

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Predicted Domain #1
Region A:
Residues: [1-555]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSWLGGDSS KKKNKEVLET VSEGLRKIYK QKLLPLEEFH KFHDFHSPAL DDPDFDAKPM  60
   61 ILLVGQYSTG KTTFIRYLLE SDFPGIRIGP EPTTDRFIAV MHGDEEGSIP GNALVVDAKK 120
  121 QFRALSGFGN AFLNRFQCST LPNQVLESVT IVDTPGILSG EKQRIDRGYD FTGVLEWFAE 180
  181 RVDRIILLFD AHKLDISDEF KRCIEALAGN EDKIRIVLNK SDMVDHQQLM RVYGALMWSL 240
  241 GKVFKTPEVS RVYLGSFWDH PLHYDLNRRL FQDEQHDLFQ DLQALPRNAA LRKLNDLIKR 300
  301 ARLAKVHAYI IAELRKQMPS MIGKDKKKKD LIQNLDKIYE QLQREHNISP GDFPDVNKMR 360
  361 EKLQTQDFSK FNPLKPKLLE VVDGMLATDI ARLMAQIPKE EAAAPAGSNG SADPTVRGGA 420
  421 FSQTTEAETP FGFGRGEGFD KGADEAEWVV SRERTTADST FESLGPVNGY LSGRAAKEHM 480
  481 VKSKLPNSVL GKVWKLADID KDGQLDADEF ALANYLINLK LEGHEIPSEL PKHLIPPSKR 540
  541 GEQDPVYPSL NDNDE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 100.0
Match: 2qptA
Description: No description for 2qptA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle