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View Structure Prediction Details

Protein: npa-1
Organism: Caenorhabditis elegans
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npa-1.

Description E-value Query
Range
Subject
Range
npa-1 - status:Confirmed UniProt:Q9TYU6 protein_id:AAC78208.1
250.0 [0..1] [399..1042]

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Predicted Domain #1
Region A:
Residues: [1-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEGKSKDD IKKRLFEMVE AKEKDAGEKE KTVKLCYAWM DDVATKEEIE GLHKLHHVDH  60
   61 GACKKKVREF IGRLPEEKQK AVEASLPFCE KLWYGDHASH EGHEGHGDHS GHNHHHIKRR 120
  121 HLAVIEKYIE WLDEIQKGAI RELEASGADF NVIADKIKEF FHLLPEQKQT DVKEKFQNQC 180
  181 MTWAKEVSKP TEWEEIKKLH AAEDFNTLKL KLVELEERLT ENQKHTIEHV RGVCYRLWGI 240
  241 KNLARRRRVP NSEASFQEKA AKYLDW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [267-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEEQLNELK RLKSEGKKSE VMKAILKFYD ETTGDAKEKA EGKLKEACKE YSVKAFGEEK  60
   61 VAQFKAQYKK LKDENAEQSE IEKLSNQYID EIEDEQKKDF AKAVVTGCKH VYASTRSRRD 120
  121 LIAQAVAEYL QNA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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