YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE33328
Organism: Caenorhabditis elegans
Length: 369 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE33328.

Description E-value Query
Range
Subject
Range
gi|157761743 - gi|157761743|ref|XP_001673214.1| Hypothetical protein CBG01382 [Caenorhabditis briggsae AF16]
gi|187038493, gi... - gi|39588751|emb|CAE58275.1| Hypothetical protein CBG01382 [Caenorhabditis briggsae], gi|187038493|em...
214.0 [0..22] [369..21]

Back

Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSLSSSS NASSLSAPEG LSPNNSLSPD VGAQRFFSQG KRIPKDVKRH CGMCKQHGVF  60
   61 VETRGHTCEY RSCECEQCDL VRKRREIMST QIRLRREQDK KFQRTNDISE ANVFP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.39794
Match: 1lpvA
Description: DM domain of Doublesex (dsx)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [116-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFTGGEADEK AVMENMNMCY FCQKCKNHNV LVWKKNHKKE CQYSSCECQQ CNLIDSRRAL  60
   61 DRHIKKRKMS IKGNTVEAIA PKSPKKEGST TASSSSLSSS SGCNSDESAS SSDC

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.24
Match: 1lpvA
Description: DM domain of Doublesex (dsx)
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [230-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLSGMLSEKL NMAPQVQMKF DFSAGGFMIP AATSANASTS PAGSPFETTS PMPLLLPHSP  60
   61 IALPQLAPSS LPLSFLTVPS LMSTAASPFF TAPLMYGAAP TLFPNPLLMT PIGMQMLFQN 120
  121 FQNFQNIREL SAAISCAETD 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle