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View Structure Prediction Details

Protein: mab-20
Organism: Caenorhabditis elegans
Length: 174 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mab-20.

Description E-value Query
Range
Subject
Range
SEM4D_MOUSE - Semaphorin-4D OS=Mus musculus GN=Sema4d PE=1 SV=2
167.0 [0..9] [173..27]

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Predicted Domain #1
Region A:
Residues: [1-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNFLVFSVI FIAYNSCEAA NIQADNTFAD PNIGEFRELL IDPKAGALFV GSEGAIFRLW  60
   61 AYNINDTGEN VFAKKQLVLS ESEESECRST ASDERLCRPS TRFLAFTNNL DSIYVCSSVG 120
  121 MRPEIRVLDS LSLRDQQEPR TEIGICVVDP TFNFTAVVVD SGNPEGKQVR SIDK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.522879
Match: 1olzA
Description: The ligand-binding face of the semaphorins revealed by the high resolution crystal structure of SEMA4D
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle