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View Structure Prediction Details

Protein: scpl-3
Organism: Caenorhabditis elegans
Length: 312 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for scpl-3.

Description E-value Query
Range
Subject
Range
scpl-3 - status:Confirmed UniProt:Q9N4V4 protein_id:AAF60646.1
296.0 [0..1] [312..1]

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Predicted Domain #1
Region A:
Residues: [1-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVTPKLVW PEDDYVDESL LEDHQGPARL EYDALVMLAN LPPLTEEIMS RCPALPVKTR  60
   61 STPEYTLVLD LDETLVHCSL TPLDNATMVF PVVFQNITYQ VYVRLRPHLR TFLSRMAKTF 120
  121 EIIIFTASKK VYANKLCDIL DPRKNHIRHR LFREHCVCVF GNYVKDLTIL GRDPSKTMIL 180
  181 DNAVQSFAYQ LDNGIPIESW FHDRNDTELL KLCSFLEAIP TLVNFHFEIK VKTN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.522879
Match: 2hhlA
Description: No description for 2hhlA was found.

Predicted Domain #2
Region A:
Residues: [235-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SICLAILSSN NFQGRDVREI LRHKYRLRDH IPFYSIIHQQ EGPGRLPLLE VAPPPVTEPN  60
   61 DEQLITQVVQ KHPQLVQG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle