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View Structure Prediction Details

Protein: wht-7
Organism: Caenorhabditis elegans
Length: 684 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for wht-7.

Description E-value Query
Range
Subject
Range
gi|66850438, gi|... - gi|70996096|ref|XP_752803.1| ABC transporter [Aspergillus fumigatus Af293], gi|66850438|gb|EAL90765....
gi|159131557 - gi|159131557|gb|EDP56670.1| ABC transporter, putative [Aspergillus fumigatus A1163]
gi|44890030 - gi|44890030|emb|CAF32148.1| ABC transporter, putative [Aspergillus fumigatus]
479.0 [0..5] [682..821]

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Predicted Domain #1
Region A:
Residues: [1-64]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSNVIQGS IESMSVVDST SDIDKADKSF MEELRPKMLL TWHDISVSDS SEDYSSNSGL  60
   61 FGKC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.09691
Match: 2dpyA
Description: No description for 2dpyA was found.

Predicted Domain #2
Region A:
Residues: [65-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CPIKVGDVEK MSVEKRILDS VFGVARPGEV TAIIGPSGAG KTTLLNVLTK RNLSNLKATG  60
   61 SVKVNGIRAE RSYMRQVCAY VQQDDCFIGS LTVEEHLKFM AKLKMGSEYD LNEQERRVKS 120
  121 VMRSLGLEKI ADSIIGTRTR KGISGGEKKR LAFASEILTS PPILICDEPT SGLDSFLAYQ 180
  181 VVCVLKKLAE TRNMTILLTI HQPSSQVFQL FDRILFLESF PKLRKSSDKH SIYMMVNGDV 240
  241 AFCGSQSGAE KMWSEMKLPI PMNFNPSDHY LATMSIRDQA EETLKKNQIG KICTTFKYSE 300
  301 LGKSVFKESS GREVDERDRA FSEDWRRRYA TTFGRPRFGA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.522879
Match: 1z47A
Description: Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [405-684]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFFQQIRALT WRASKTVLRE PTLLKVQTFQ SIIIAILTGL VYTNNSPVDQ QKIMNINGSL  60
   61 YQMISNMAFM FQFSVVHHFC LEMNTFYRET SSRLYRVSAY FISKNLAELP SYIVSAVIFT 120
  121 SILYWMSGLV PIIDSFLIYM LVGILVQNIA ISIGYMFSCI FGTVNLAVAV MPIFVVPMMA 180
  181 FGGFFINQDT LQWYFVPMKY LSYFGYGYEA VAIAQWTHVE EIPGCSSSLA HCSRNGTDVL 240
  241 NSMSFKPSNF WVDISVMAFM IFVFRFLAFM ALYVRVKRRS 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 38.721246
Match: PF01061.15
Description: No description for PF01061.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle