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View Structure Prediction Details

Protein: tag-332
Organism: Caenorhabditis elegans
Length: 765 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tag-332.

Description E-value Query
Range
Subject
Range
gi|50757295 - gi|50757295|ref|XP_425330.1| PREDICTED: similar to bromodomain containing protein 3; RING3-like gene...
395.0 [0..30] [649..157]

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Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEGSGDQSQ QRPWASPRQQ PIKGIVQPRV LPPFGKPTRH TNKLDYIMTT VLKEAGKHKH  60
   61 VWPFQKPVDA VALCIPLYHE RVARPMDLKT IENRLKSTYY TCAQECIDDI ETVFQNCYTF 120
  121 NGKEDDVTIM AQNVHEVIKK SLEQAPREEH DMDVYWGKNK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.69897
Match: 1x0jA
Description: No description for 1x0jA was found.

Predicted Domain #2
Region A:
Residues: [161-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKPAKSDGGS KSSSSKKNDA RGPSEAPSEA GSEVSSVTTA SAAAPTVSES ASVAAKPERK  60
   61 VAGKKTGKRK AESEDDEKPE PLRAKREVAV VKKEVHQPLL PSMKPCLKLL NDFSTKKYQE 120
  121 FAWPFNEPVD AEQLGLHDYH KIIKEPMDLK SMKAKMESGA YKEPSDFEHD VRLMLRNCFL 180
  181 YNPVGDPVHS FGLRFQEVFD RRWAELGDSS SRASSVAPQS APIAPTPKVA KSSAPKEPKE 240
  241 SRKEHKK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 5.44
Match: 2ouoA
Description: No description for 2ouoA was found.

Predicted Domain #3
Region A:
Residues: [408-566]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETTFEASGAK SEDLMQINNA LSMIREREEK LKAELAAAQA IKDKLTSVKN RREDNPNEPF  60
   61 PEKLINETRA LCTTQVGQNA SSSSASSAAL RNGRSKKAAS ARLYGYEFDS DDEDNKMALT 120
  121 YEEKRNLSNL INNLPNNQLN TIISIIQRRE RSALMQQQL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [567-765]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDSEVELDFE SLGDMCLREM GAFIKTIPTL NGNGDDEKPK TSSNPTSSGA TGSKGSSSLE  60
   61 SKNGKKKKNF NMSESSDDET SNSRKRRKRE SSESQSSSSS DDDSDDEDRP SIPRKSGQPP 120
  121 STSREWNQSS APPPRMGGMG GQPPMSRVPA SSSTSVSAIG KNNAAASSNS YQKFYNCFHS 180
  181 YTPPLKVEKK IIKLLVNFC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle