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View Structure Prediction Details

Protein: hum-2
Organism: Caenorhabditis elegans
Length: 440 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hum-2.

Description E-value Query
Range
Subject
Range
gi|114657117 - gi|114657117|ref|XP_001170365.1| PREDICTED: myosin VA (heavy polypeptide 12, myoxin) isoform 4 [Pan ...
418.0 [0..1] [439..1407]

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Predicted Domain #1
Region A:
Residues: [1-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNDKLTRQ SEELAEARAQ LRGYSGPLGL ENASDEEIIR LEAFEKGSIK HSGFLEVYNV  60
   61 PEFARIIVCE LKPTLARLLT KNLPAYLLVA AFRNHDEKRD ETALTGLFSS VHLVLKDTIS 120
  121 RSHDLDLLSL WLVNLWRLFN LLRQYSGEDS QPEWHVANTE TQNSYRFKAY DVAPIRDQLK 180
  181 LRIEECYTSL MKKAIEHVLS PKIVPGILQH ESSSDLMTAG QERRDRNSGS VESQRKSLDD 240
  241 LLQFMEIVHT KLTTYGGDDI VVKQVIGQMA RWMCALALNY MMFRRELCNF EKAIQIKHNV 300
  301 TQIQNWLNAK GLSDCRDHFE PLVQACHLLQ SRKDPSNLDT LCGEMTSRLK PRQVVAILQH 360
  361 YDPSDEMEDG LSPEFLVQIQ KKLNERAIAN NDPIEDKDKL IMLGTYLPPF DTQPFSYSDF 420
  421 PLETLSLPSC LHMQSVCRLV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.522879
Match: 2f6hX
Description: Myosin V cargo binding domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle