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View Structure Prediction Details

Protein: CE32969
Organism: Caenorhabditis elegans
Length: 311 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32969.

Description E-value Query
Range
Subject
Range
gi|39586914, gi|... - gi|39586914|emb|CAE62849.1| Hypothetical protein CBG07028 [Caenorhabditis briggsae], gi|187033681|em...
gi|157753978 - gi|157753978|ref|XP_001680701.1| Hypothetical protein CBG07028 [Caenorhabditis briggsae AF16]
218.0 [0..1] [311..1]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTGGLSDFA DFGEEDANCT QGIQWIKDVF TDCVDTDLKL LGFIIGLISL ALWLIPLFPQ  60
   61 LWQNYKTKKC EGLSLAFLFF WLVGDTCNML GAILTNQQPI QKIIGVYYII QDLVLWTQYG 120
  121 Y

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 14.055517
Match: PF04193.5
Description: No description for PF04193.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [122-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLKIYNRPTT SSARSNTIVV PVLALASVGS FFVFESALPP VGDHRVKRSF LESLNHQEGL  60
   61 PLEGILKMWP I

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [193-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTSYTDMLGY IIGSMAAVCY FGGRIPQIIK NYRHSSCEGL SLTMFYIIVA ANFTYGISVL  60
   61 LATTSWLYLL RHLPWLAGSL GCCCFDAVII SQYYLYRPKT PLAEDTERAG LLNSQDDSD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 12.657577
Match: PF04193.5
Description: No description for PF04193.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle