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View Structure Prediction Details

Protein: CE32968
Organism: Caenorhabditis elegans
Length: 367 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32968.

Description E-value Query
Range
Subject
Range
gi|157753976 - gi|157753976|ref|XP_001680700.1| Hypothetical protein CBG07029 [Caenorhabditis briggsae AF16]
gi|39586915, gi|... - gi|39586915|emb|CAE62850.1| Hypothetical protein CBG07029 [Caenorhabditis briggsae], gi|187033680|em...
248.0 [0..1] [321..1]

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Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNMQHYMDD INDLMEGMNE EMTKRLARVT KWDEQIDVDS AEAQKFEKIM FDTQKSEKER  60
   61 VEAGRKLADL KCRIRELAEK KTLLAERNHR TVQAVYTKLN ELAYHCKCEL ETDNPGSTEQ 120
  121 RERVFYQTLD KNYRGEYQSS IPNVRTTNSG RQRTREYSVM TDDDRASTSS GTLFTKREKS 180
  181 SLK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [184-367]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGPGRPRNAF KMAHFDRFPV DSNASSARSS MEPSECGGSQ NTKKLSKYMK KKNEKMRKEE  60
   61 QKLSKFDVKR EVDTGDYESF ALNQWNNDDD MGMTSSKMMN GSSLMELCEE EEAELLDCFA 120
  121 GLPSPPRGMM DVLDVTESDV CGMDLYPKDH KSENYDDFRH PGASAMSSQS FTHKRANNTN 180
  181 RPRH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle